PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G031600.1
Common NameB456_013G031600, LOC105783736
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 251aa    MW: 27146.4 Da    PI: 7.1132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G031600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002791113123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Gorai.013G031600.1  91 FSCNYCRRKFYSSQALGGHQNAH 113
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-689119No hitNo description
PROSITE profilePS5015711.38591118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTLPNLGLES ENDSKASSQV ASNISAQEAS TDPSKDTTTT TSCLSNPVKV QPDPGSVSLD  60
LTLHFSANDA EMKGATGETM GINTLSTPRV FSCNYCRRKF YSSQALGGHQ NAHKRERTMA  120
KRAMRMGLLS DRYTSLASLP LHGSAFRSLG VKAHSAMHQG MLPSSQRPVD TRSGARFDQG  180
CFGMPIFMED EEVDLYWPGS FRQVNEERVG SNQAMELSQN PTQSSNIGFI AMATLPRADA  240
SSQLDLTLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464808.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_012464807.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_012464806.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392637e-42ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A0D2S7K60.0A0A0D2S7K6_G
STRINGVIT_01s0011g06200.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.15e-43zinc finger protein 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]